species:   Rhsol
pid:       PID0561
parent:    Rhi-milR-42
paralog:   
locus:     KB317729.1:118633-118711
matures:   ['CACGGUCUGUCCACCAAGAG', 'CCUGGAUCGGAGCAGGUCCGUGCC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317729.1:118633-118711

1 out of bounds
21 alignments
21 proper strand
20 stranded perfect matches

        ***********************            ***************************         
AGCCUCUUCCCACGGUCUGUCCACCAAGAGCAAGUUCACGAUCACUCCUGGAUCGGAGCAGGUCCGUGCCACCAUUGCC
.((.......((((((((((((.(((.(((..(........)..))).)))...))).)))).)))))........)).
----------CACGGUCUGUCCACCAAGAG------------------------------------------------- l=20 a=0 c
----------------------------------------------CCUGGAUCGGAGCAGGUCCGUGCC--------- l=24 a=0 c*
----------CACGGUCUGUCCACCAAGAGC------------------------------------------------ l=21 a=11 ma
---------------------------------------------UCCUGGAUCGGAGCAGGUCCGUGCC--------- l=25 a=0 ma*

-------UCCCACGGUCUGUCCACCAAGAGCAAG--------------------------------------------- l=27 a=1 
---------CCACGGUCUGUCCACCAAGAGC------------------------------------------------ l=22 a=2 
----------CACGGUCUGUCCACCAAGAGC------------------------------------------------ l=21 a=11 (ma)
----------CACGGUCUGUCCACCAAGAGCA----------------------------------------------- l=22 a=1 
----------CACGGUCUGUCCACCAAGAGCAAG--------------------------------------------- l=24 a=1 
-----------ACGGUCUGUCCACCAAGAGC------------------------------------------------ l=20 a=1 
-----------ACGGUCUGUCCACCAAGAGCA----------------------------------------------- l=21 a=1 
-----------ACGGUCUGUCCACCAAGAGCAA---------------------------------------------- l=22 a=1 
------------CGaUCUGUCCACCAAGAGCAAG--------------------------------------------- l=22 a=1 
------------CGGUCUGUCCACCAAGAGCAAG--------------------------------------------- l=22 a=1 

mb-01011
ax-1011111
ku-01
ss-111111101010
fn-111
